ASPDock: protein-protein docking algorithm using atomic solvation parameters model
                    
                        
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                    چکیده
منابع مشابه
Efficient electrostatic solvation model for protein-fragment docking.
A method is presented for the fast evaluation of the binding energy of a protein-small molecule complex with electrostatic solvation. It makes use of a fast preprocessing step based on the assumption that the main contribution to electrostatic desolvation upon ligand binding originates from the displacement of the first shell of water molecules. For a rigid protein, the precomputation of the en...
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We developed a new high resolution protein-protein docking method based on Best-First search algorithm that loosely imitates protein-protein associations. The method operates in two stages: first, we perform a rigid search on the unbound proteins. Second, we search alternately on rigid and flexible degrees of freedom starting from multiple configurations from the rigid search. Both stages use h...
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ClusPro (http://nrc.bu.edu/cluster) represents the first fully automated, web-based program for the computational docking of protein structures. Users may upload the coordinate files of two protein structures through ClusPro's web interface, or enter the PDB codes of the respective structures, which ClusPro will then download from the PDB server (http://www.rcsb.org/pdb/). The docking algorithm...
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A PROBABILISTIC SEARCH ALGORITHM FOR PROTEIN-PROTEIN DOCKING Irina Hashmi, MS George Mason University, 2012 Thesis Director: Dr. Amarda Shehu Computational methods able to assist or complement wet-laboratory experiments in structural characterization of molecular assemblies promise to provide detailed insight into molecular interactions, drug-design, and biological function in the living and di...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2011
ISSN: 1471-2105
DOI: 10.1186/1471-2105-12-36